I’ve created a bipartite graph using the bipartite package in R, but I want to colour the edges for each of my nodes a different colour so it’s easier to see the different connections.
Sample of my data and code I used:
structure(list(Species = c("Circium arvense", "Hypericum perforatum",
"Plantago lanceolata", "Trifolium pratense", "Trifolium repens"
), Asteraceae = c(496643L, 295467L, 411L, 420L, 46338L), Apiaceae = c(0L,
6L, 4L, 1L, 2L), Anacardiaceae = c(220L, 25L, 100L, 118L, 25L
)), class = c("tbl_df", "tbl", "data.frame"), row.names = c(NA,
-5L))
>View(data.sp)
Species Asteraceae Apiaceae Anacardiaceae
<chr> <int> <int> <int>
1 Circium arvense 496643 0 220
2 Hypericum perforatum 295467 6 25
3 Plantago lanceolata 411 4 100
4 Trifolium pratense 420 1 118
5 Trifolium repens 46338 2 25
# Create bipartite of main flowers and their plant-plant connections
data.mat <- as.matrix(data.sp[,-1])
rownames(data.mat) <- data.sp$Species
plotweb(data.mat,
method="normal",
text.rot = 90,
labsize = 0.9,
plot.axes = FALSE,
y.width.low = 0.05,
bor.col.interaction = "NA",
col.high = "#58D68D",
col.interaction = "#ffd450",
col.low = "#85C1E9")
Yes it looks ugly but bare with me – my goal here is to make each of the blue nodes have their own unique colours to their edges. For example, all the connections from Circium arvense can be pink, all the Hypericum perforatum can be yellow, etc. Is this possible??