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How do you program and modifying the bootloader section of a ATXmega A1u board?

I am new to microcontrollers and embedded programming and one of the things i don’t seem to understand is how is one supposed to add/modify the bootloader code? lets say i want to store an application that echoes back to me the char i entered in the boot section (just for example) what do i set in microchip studio to program this application at x address in boot section of memory?