How to run snakemake on AWS now that Tibanna is not anymore available on Snakemake 8

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Currently I am running snakemake pipelines on AWS using an older version of Snakemake (7.30.0). I would like to update to a more recent version of Snakemake. Unfortunately it seems that Tibanna is not supported anymore on Snakemake 8.

What would be the best way to run a Snakemake pipeline on AWS using Snakemake 8? Using Kubernetes? And is there a tutorial that describes how to do this?

  • amazon-web-services
  • kubernetes
  • snakemake
  • tibanna

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